Learn to use the PROSITE, a database that gathers domain, functional site and protein family information. You can scan protein sequences against the entries in the PROSITE database using ScanProsite. Use the PRATT tool to discover patterns in a group of unaligned sequences or us the MyDomains Image Creator to create custom domain graphics for displaying your data.
You will learn:
This tutorial is a part of the tutorial group Motifs and Domains. You might find the other tutorials in the group interesting:
Melina II: A Web-Based Tool for Promoter Analysis
MINT: Molecular Interaction Database
Gibbs Motif Sampler: A motif finder and analysis tool
MEME Suite Sequence Annotation Tools: MEME suite motif finding and annotating tools
MDscan: Motif Discovery scan for nucleotide and protein motifs
MEME Suite GLAM2 Algorithm: Part of a motif discovery tool that can detect conserved motifs in a set of DNA or protein sequences.
MEME Algorithm: Multiple Expectation Maximum for Motif Elicitation
MEME Suite Overview: Motif-based sequence analysis tools
MEME Suite TOMTOM and GOMO algorithms: Motif discovery tool that can detect conserved motifs in a set of DNA or protein sequences that you provide
SMART: Protein domain annotation and analysis of domain architectures
InterPro: A comprehensive protein signature resource
Proteins : Tools that are primarily used in the storage, retrieval, or exploration of amino acid based data. Some tools may also involve nucleotide sequence information.
What's the answer? (Functional regions of proteins): BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of the community and find it very useful. Often questions and answers arise at BioStar that are germane t...
New and Updated Online Tutorials for PROSITE, InterPro, IntAct and UniProt: Comprehensive tutorials on the publicly available PROSITE, InterPro, IntAct and UniProt databases enable researchers to quickly and effectively use these invaluable resources. Seattle January 14, 2009 ...
Teaching and annotating at the same time: A recent paper (couple weeks ago) in PLoS Biology from Hingamp et al. had me intrigued. Entitled Metagenome Annotation Using a Distributed Grid of Undergraduate Students, the lecturers put together a s...
Tip of the Week: Draw your own domains: There are some amazingly complicated programs in bioinformatics that do everything from assembling your genome to analyzing its evolutionary relationships and then make breakfast for you. Well, ok, not...
Recent BioMed Central research articles citing this resource
Bailey Dondra et al., The essential requirement of an animal heme peroxidase protein during the wing maturation process in Drosophila. BMC Developmental Biology (2017) doi:10.1186/s12861-016-0143-8
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Chakraborty Joydeep et al., Thermophilic bacteria are potential sources of novel Rieske non-heme iron oxygenases. AMB Express (2017) doi:10.1186/s13568-016-0318-5
Rizwan Muhammad et al., VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology Sequence analysis (applications). BMC Bioinformatics (2017) doi:10.1186/s12859-017-1540-0
Hazarika R. Rashmi et al., ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana Results and data. BMC Bioinformatics (2017) doi:10.1186/s12859-016-1458-y